Neuroscience Tools - Revision history

Monakhos at 10:51, 12 May 2013

2013-05-12T10:51:32Z

← Older revision		Revision as of 03:51, 12 May 2013
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	{{Box\|width=255px\|Bioinformatics Tools\|		{{Box\|width=255px\|Bioinformatics Tools\|
			*[http://bbid.grc.nia.nih.gov/ BBID-Biological Biochemical Image Database]
	}}		}}

Monakhos at 08:53, 12 May 2013

2013-05-12T08:53:54Z

← Older revision		Revision as of 01:53, 12 May 2013
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	~~{{Box\|width=255px\|NIH NIF\|~~		<html><iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="775" width="250" frameborder="0" seamless="seamless" style="float:right"></iframe>
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Monakhos at 08:43, 12 May 2013

2013-05-12T08:43:13Z

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-{{Box|width=255px|Neural Informatics|
+{| class="wikitable" style="background-color:white;"
-*[http://www.ccam.uchc.edu/resources/modeling_links.html VCell]
+|+Neural Informatics Tools
 }}

Monakhos at 08:15, 12 May 2013

2013-05-12T08:15:39Z

← Older revision		Revision as of 01:15, 12 May 2013
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	<iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="775" width="250" frameborder="0" seamless="seamless"></iframe>		<iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="775" width="250" frameborder="0" seamless="seamless"></iframe>
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			{{Box\|width=255px\|Neural Informatics\|
			*[http://www.ccam.uchc.edu/resources/modeling_links.html VCell]
	}}		}}

Monakhos at 08:13, 12 May 2013

2013-05-12T08:13:27Z

← Older revision		Revision as of 01:13, 12 May 2013
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	<iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="~~775px~~" width="250" frameborder="0" seamless="seamless"></iframe>		<iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="775" width="250" frameborder="0" seamless="seamless"></iframe>
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Monakhos at 08:12, 12 May 2013

2013-05-12T08:12:48Z

← Older revision		Revision as of 01:12, 12 May 2013
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			{{Box\|width=255px\|NIH NIF\|
	<html>		<html>
	<iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="~~800~~" width="250" frameborder="0" seamless="seamless"></iframe>		<iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="775px" width="250" frameborder="0" seamless="seamless"></iframe>
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Monakhos at 07:00, 12 May 2013

2013-05-12T07:00:06Z

← Older revision		Revision as of 00:00, 12 May 2013
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	<iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="800" width="250" seamless="seamless">
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			<iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="800" width="250" frameborder="0" seamless="seamless"></iframe>
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Monakhos at 06:47, 12 May 2013

2013-05-12T06:47:07Z

← Older revision		Revision as of 23:47, 11 May 2013
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Monakhos: Replaced content with "</html>"</h1> <p>2013-05-12T06:46:45Z</p> <p>Replaced content with "<html><iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="800" width="250" seamless="seamless"></html>"</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 23:46, 11 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><html><iframe src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="800" width="250" seamless="seamless"></<ins style="font-weight: bold; text-decoration: none;">html</ins>></div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><<del style="font-weight: bold; text-decoration: none;">htmltag tagname="iframe" src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.</del>html<del style="font-weight: bold; text-decoration: none;">" height="800" width="250" seamless="seamless"</del>><<del style="font-weight: bold; text-decoration: none;">/htmltag></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"><htmltag tagname="</del>iframe<del style="font-weight: bold; text-decoration: none;">" </del>src="http://www.neuinfo.org/downloads/nif_navigator_1.2/nif_navigator.html" height="800" width="250" seamless="seamless"></<del style="font-weight: bold; text-decoration: none;">htmltag></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"><table width="274" border="0"></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <tr></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <td width="50%"><div align="center">Modeling Links </div></td></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <td width="50%"><div align="center"><a href="#CellDatabases">Database Links</a></div></td></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> </tr></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> </table></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> The following links are provided as a source to other modeling environments, modeling resources and cell based databases. </del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://vcell.org/bionetgen/" target="_blank">BioNetGen</a> - A web-based tool for automatically generating a biochemical reaction networks from user-specified rules for biomolecular interactions. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://bionumbers.hms.harvard.edu/" target="_blank">B10NUMB3R5</a> - (BIONUMBERS) A database of useful biological numbers. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://www.bioinformaticsservices.com/" target="_blank">BioInformatics Services</a> - BioInformatics Services is a biotechnology consulting firm specializing in using computational biology to solve complex biological and data analysis problems. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://www.cellmigration.org/resource/modeling/model_resources.shtml#softwares" target="_blank">cellmigrationgateway</a> - modeling software </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://www.cellml.org/" target="_blank">CellML</a>- The CellML language is an open standard based on the XML markup language at the University of Auckland and affiliated research groups. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="https://sites.google.com/site/compcellbio/" target="_blank">CompCell Bio Web</a> - Development site for teaching modules on quantitative cell biology. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://doqcs.ncbs.res.in/" target="_blank">DOQCS</a> - Quantitative Cellular Signaling (DOQCS) is a repository of models of signaling pathways. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://www.e-cell.org/ecell/" target="_blank">E-Cell</a> - A Multi-Algorithm, Multi-Timescale Simulation Software Environment. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://gfit.sourceforge.net/" target="_blank">Gfit</a> - A program for global regression analysis of experimental data. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://www.kitware.com/" target="_blank">Kitware</a> - Professional Visualization Solutions, Tools and Support. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://www.mcell.cnl.salk.edu/" target="_blank">MCell</a> - General Monte Carlo Simulator of Cellular Microphysiology. </p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <p></del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> <a href="http://mnm.engr.uconn.edu/MNM/SMSSearchServlet" target="_blank">Minimotif Miner</a> - Application to search for short sequence motifs in Proteins. </p</del>></div></td><td colspan="2" class="diff-side-added"></td></tr> </table> </article> <article> <h1>Monakhos at 06:39, 12 May 2013</h1> <p>2013-05-12T06:39:32Z</p> <p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 23:39, 11 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; 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